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Phys. Rev. Lett. 100, 228105 (2008) [4 pages]

Nucleosome Switches

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David J. Schwab*, Robijn F. Bruinsma, and Joseph Rudnick
Department of Physics and Astronomy, University of California, Los Angeles, Los Angeles, California 90024, USA

Jonathan Widom
Department of Biochemistry, Molecular Biology, and Cell Biology, Northwestern University, Evanston. Illinois 60208, USA

Received 7 August 2007; published 6 June 2008

We present a statistical-mechanical model for the positioning of nucleosomes along genomic DNA molecules as a function of the strength of the binding potential and the chemical potential of the nucleosomes. We show that a significant section of the DNA is composed of two-level nucleosome switching regions where the nucleosome distribution undergoes a localized, first-order transition. The location of the nucleosome switches shows a strong correlation with the location of gene-regulation regions.

© 2008 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.100.228105
DOI:
10.1103/PhysRevLett.100.228105
PACS:
87.15.A−, 05.20.Jj, 87.16.Sr

*djs47@physics.ucla.edu