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Phys. Rev. Lett. 101, 118101 (2008) [4 pages]

Strain Softening in Stretched DNA

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Binquan Luan and Aleksei Aksimentiev
Department of Physics, University of Illinois at Urbana-Champaign, 1110 W. Green Street, Urbana, Illinois 61801, USA

Received 15 January 2008; published 10 September 2008

The microscopic mechanics of DNA stretching was characterized using extensive molecular dynamics simulations. By employing an anisotropic pressure-control method, realistic force-extension dependences of effectively infinite DNA molecules were obtained. A coexistence of B and S DNA domains was observed during the overstretching transition. The simulations revealed that strain softening may occur in the process of stretching torsionally constrained DNA. The latter observation was qualitatively reconciled with available experimental data using a random-field Ising model.

© 2008 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.101.118101
DOI:
10.1103/PhysRevLett.101.118101
PACS:
87.14.gk, 87.15.A−, 87.15.La