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Phys. Rev. Lett. 103, 050603 (2009) [4 pages]

Trajectory Approach to Two-State Kinetics of Single Particles on Sculpted Energy Landscapes

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David Wu1, Kingshuk Ghosh2, Mandar Inamdar3, Heun Jin Lee1, Scott Fraser1, Ken Dill2, and Rob Phillips1,*
1California Institute of Technology, Pasadena, California, USA
2University of California, San Francisco, California, USA
3Indian Institute of Technology, Mumbai, India

Received 3 March 2008; published 31 July 2009

We study the trajectories of a single colloidal particle as it hops between two energy wells which are sculpted using optical traps. Whereas the dynamical behaviors of such systems are often treated by master-equation methods that focus on particles as actors, we analyze them instead using a trajectory-based variational method called maximum caliber (MaxCal). We show that the MaxCal strategy accurately predicts the full dynamics that we observe in the experiments: From the observed averages, it predicts second and third moments and covariances, with no free parameters. The covariances are the dynamical equivalents of Maxwell-like equilibrium reciprocal relations and Onsager-like dynamical relations.

© 2009 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.103.050603
DOI:
10.1103/PhysRevLett.103.050603
PACS:
05.40.−a, 02.50.Fz, 02.50.Tt, 05.45.Tp

*phillips@pboc.caltech.edu