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Phys. Rev. Lett. 81, 5237–5240 (1998)

Variational Theory for Site Resolved Protein Folding Free Energy Surfaces

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J. J. Portman, S. Takada*, and P. G. Wolynes
Departments of Physics and Chemistry, University of Illinois, Urbana, Illinois, 61801

Received 28 May 1998; published in the issue dated 7 December 1998

We present a microscopic variational theory for the free energy surface of a fast folding protein that allows folding kinetics to be resolved to the residue level using Debye-Waller factors as local order parameters. We apply the method to the λ-repressor protein and compare with site directed mutagenesis experiments. The formation of native structure and the free energy profile along the folding route are shown to be well described by the capillarity approximation but with some fine structure due to local folding topology.

© 1998 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.81.5237
DOI:
10.1103/PhysRevLett.81.5237
PACS:
87.15.-v

*Present address: Department of Chemistry, Kobe University, Rokkodai, Kobe, 657 Japan.