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Phys. Rev. Lett. 93, 238101 (2004) [4 pages]

Lattice Tube Model of Proteins

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Jayanth R. Banavar1, Marek Cieplak2, and Amos Maritan3
1104 Davey Laboratory, Department of Physics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
2Institute of Physics, Polish Academy of Sciences, Aleja Lotników 32/46, 02-668 Warsaw, Poland
3Dipartimento di Fisica and INFN, Universitá degli Studi di Padova, via Mazzolo 8, 35100, Padova, Italy

Received 8 May 2004; published 29 November 2004

We present a new lattice model for proteins that incorporates a tubelike anisotropy by introducing a preference for mutually parallel alignments in the conformations. The model is demonstrated to capture many aspects of real proteins.

© 2004 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.93.238101
DOI:
10.1103/PhysRevLett.93.238101
PACS:
87.15.He, 87.15.Aa, 87.15.Cc