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Phys. Rev. Lett. 94, 128701 (2005) [4 pages]

Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network

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Sui Huang1,*, Gabriel Eichler1, Yaneer Bar-Yam2, and Donald E. Ingber1
1Vascular Biology Program, Departments of Pathology & Surgery, Children’s Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA
2New England Complex Systems Institute, Cambridge, Massachusetts 02138, USA

Received 13 September 2004; published 1 April 2005

Cells in multicellular organisms switch between distinct cell fates, such as proliferation or differentiation into specialized cell types. Genome-wide gene regulatory networks govern this behavior. Theoretical studies of complex networks suggest that they can exhibit ordered (stable) dynamics, raising the possibility that cell fates may represent high-dimensional attractor states. We used gene expression profiling to show that trajectories of neutrophil differentiation converge to a common state from different directions of a 2773-dimensional gene expression state space, providing the first experimental evidence for a high-dimensional stable attractor that represents a distinct cellular phenotype.

© 2005 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.94.128701
DOI:
10.1103/PhysRevLett.94.128701
PACS:
89.75.-k, 05.45.-a, 87.16.Yc, 87.18.-h

*Electronic address: sui.huang@childrens.harvard.edu