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Phys. Rev. Lett. 98, 158103 (2007) [4 pages]

Stretching of Homopolymeric RNA Reveals Single-Stranded Helices and Base-Stacking

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Yeonee Seol*, Gary M. Skinner, and Koen Visscher
Department of Physics, University of Arizona, Arizona 85721, USA

Arnaud Buhot and Avraham Halperin
Structure et Propriétés d’Architectures Moléculaires (SPrAM), UMR 5819 (CEA, CNRS, UJF), CEA Grenoble, France

Received 14 July 2006; published 12 April 2007

We have found strong supporting evidence for the helical structures of single-stranded nucleic acids by stretching individual molecules of polyadenylic acid [poly(A)] and polycytidylic acid [poly(C)]. Analyzing the force versus extension data using a two-state elastic model in which random-coil domains alternate with rigid helical domains allows one to extract the thermodynamic and structural properties. In addition, it also yields moderate to low cooperativity of the helix-coil transition for poly(A) and poly(C), respectively.

© 2007 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.98.158103
DOI:
10.1103/PhysRevLett.98.158103
PACS:
87.14.Gg, 87.15.He, 87.15.La

*Present address: JILA, University of CO, Boulder, CO 80309, USA