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Phys. Rev. Lett. 99, 158103 (2007) [4 pages]

Curve Encirclement and Protein Structure

Abstract
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Patrick Kessler* and Oliver M. O’Reilly
Department of Mechanical Engineering, University of California, Berkeley, California 94720-1740, USA

Received 25 January 2007; published 9 October 2007

A method of measuring the extent to which space curves encircle one another is introduced. The method provides a family of sets which characterize encircling curves, allowing curve pairs that engage (and also single curves that self-engage) to be distinguished. The method is applied to the backbone chains of protein molecules.

© 2007 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevLett.99.158103
DOI:
10.1103/PhysRevLett.99.158103
PACS:
87.15.By, 02.40.Ma, 87.14.Ee

*watchwrk@me.berkeley.edu